Comparison of the microbial communities of alpacas and sheep fed diets with three different ratios of corn stalk to concentrate

The objective of this study was to investigate the characteristics of ruminal microbial communities of alpacas (Lama pacos) and sheep (Ovis aries) fed three diets with varying ratios of roughage (corn stalk) to concentrate, 3:7 (LS), 5:5 (MS) and 7:3 (HS). Six alpacas (one-year-old and weighing 29.5 ± 7.1 kg) and six sheep (one-year-old and weighing 27.9 ± 2.7 kg) were used in this study, in a replicated 3 × 3 Latin square experiment. Total protozoa concentration was determined under the microscope; total fungi and methanogens were assessed using quantitative polymerase chain reaction and expressed as a percentage of total bacterial 16S rRNA gene copies; bacterial communities were investigated by targeted 16S rRNA gene (V3–V4 region) sequencing. The percentage of fungi was significantly higher in alpacas than in sheep under the LS diet, while the concentration of protozoa was significantly lower in alpacas under HS, MS and LS diets. The alpha diversity including Shannon, Chao l and ACE indices of bacterial communities was higher in alpacas than in sheep, under the LS diet. A total of 299 genera belonging to 22 phyla were observed in the forestomach of alpaca and sheep, with Bacteroidetes and Firmicutes dominating both animal species. Phyla Armatimonadetes and Fusobacteria, as well as 64 genera, were detected only in alpacas, whereas phyla Acidobacteria and Nitrospira, as well as 44 genera, were found only in sheep. The abundance of cellulolytic bacteria, including Butyrivibrio and Pseudobutyrivibrio, was higher in alpacas than in sheep under all three diets. These differences in the forestomach microbial communities partly explained why alpacas displayed a higher poor-quality roughage digestibility, and a lower methane production. Results also revealed that the adverse effects of high-concentrate diets (70%) were lesser in alpacas than in sheep.     

生物炭对酸化茶园土壤性状和真菌群落结构的影响

为探讨生物炭长期施用对酸化茶园土壤改良和真菌群落结构的影响,分析了按生物炭用量0、2.5、5、10、20、40 t·hm^-2施用5年后的茶园土壤性状和真菌群落结构变化。结果表明,施用生物炭5年后的茶园土壤pH提高了0.16~1.11,可溶性有机碳含量提高了52.6%~92.3%,而铵态氮和硝态氮含量以10 t·hm^-2处理最高。施用生物炭5年后的土壤性质变化,进一步影响了真菌群落结构,表现为Chao指数、ACE指数和Shannon指数随生物炭用量增加呈先增加后降低的趋势;提高生物炭施用量对茶园土壤次要作用的真菌（LDA值<3.50）丰度的增加效果高于优势真菌（LDA值>3.50）的效果,其中被孢霉属、木霉属、毛壳菌属的相对丰度增加,黑盘孢属的相对丰度降低。     

Development of a core set of KASP markers for assaying genetic diversity in Brassica rapa subsp. chinensis Makino

Single‐nucleotide polymorphisms (SNPs) are rapid, economical and reliable genotyping tools. Non‐heading Chinese cabbage (Brassica rapa L. subsp. chinensis Makino) is now an economically important vegetable crop worldwide. In this study, 1,167 SNPs were evaluated for 7polymorphism among 70 representative non‐heading Chinese cabbage inbred lines using a Kompetitive Allele Specific PCR (KASP) genotyping assay. On the basis of identified polymorphisms and the results of a principal component analysis, we selected 50 core SNPs that were balanced sufficiently to provide adequate information for genetic identification. The core SNPs were used for construction of a neighbour‐joining dendrogram that separated the 70 inbred lines into four main groups and several subgroups corresponding to Caixin, Heiyebaicai, Huangxinwu, Naibaicai, Taitsai, Pak‐choi, and Wutatsai. This categorization was superior to that achieved using a dataset of 479 polymorphic SNPs. To confirm the utility of the core SNP markers in genetic identification, we tested their stability and resolution using 162 commercial hybrid cultivars. The SNPs, which represent a cost‐effective, accurate marker set for germplasm analysis and cultivar identification, are suitable for molecular marker‐assisted breeding in non‐heading Chinese cabbage.     

The microbial diversity and structure in peatland forest in Indonesia

The microbial community structure and function under forest in tropical peatlands are poorly understood. In this study, we investigated the microbial community structure and diversity in natural peat swamp forest soil, disturbed peat soil and mineral soil in Central Kalimantan, Indonesia, using 454 pyrosequencing. The results showed that the natural peat soil had the greatest fungal species richness (Chao1), which was significantly (p < .05) larger than that in the other two soils. Community structure of both fungi and bacteria in natural peat soil differed significantly from that in the disturbed peat soil (p = .039 and p = .045, respectively). Ascomycota (40.5%) was the most abundant phylum across the three soils followed by Basidiomycota (18.8%), Zygomycota (<0.1%) and Glomeromycota (<0.1%). The linear discriminant analysis with effect size (LEfSe) showed that Ascomycota (p < .05) and genus Gliocephalotrichum (p < .05) dominated in natural peat soil. Functionally, pathotrophs were more abundant in disturbed peat soil (p < .05). Proteobacteria (43.8%) were the most abundant phylum followed by Acidobacteria (32.6%), Actinobacteria (9.8%), Planctomycetes (1.7%). Methylocystis, Telmatospirillum, Syntrophobacter, Sorangium and Opitutus were the more abundant genera in disturbed peat soil, whereas Nevskia and Schlesneria were more abundant in mineral soil and natural peat soil, respectively. The natural peat forest soil supported a more diverse microbiology; however, the land use of such a soil can change its microbial community structure. The results provide evidence that the disturbance of tropical peat land could lead to the introduction and spread of a large number of fungal diseases     

放牧对土壤理化性状及植被多样性的影响

放牧是家畜饲养方式之一,是草地最简单而又有效的利用方式,但放牧中的家畜家禽通过采食牧草、践踏土壤和牧草以及粪便排泄影响着草地植被和土壤,不同的强度的放牧对地下土壤与地上植被的影响不同,本文综述了近几年来放牧对地下部土壤有机质、氮、磷、钾,土壤容重、有机碳以及微生物多样性的影响,对植被多样性及草群成分的影响等,旨在为今后家畜放牧行为研究以及放牧科学研究提供理论依据。     

东北三省大豆种质品质性状鉴评与综合分析

根据目标性状有的放矢的选配杂交亲本是提高优异品质组成品种的选择效率的基本前提。本研究对东北三省102份大豆种质资源的蛋白、氨基酸组分、油份及脂肪酸组分进行测定,通过遗传多样性、主成分和聚类分析,对其进行表型鉴定及基因型分类以综合评价种质品质特性。结果表明:东北三省大豆种质油份及脂肪酸组分变异较丰富,遗传多样性程度较高。根据主成分分析筛选到9个主成分进行聚类分析,通过聚类分析将供试种质资源分为5类。第I类群蛋白含量较高、油份含量偏低,第II类群蛋白、油份含量均居中,第III类群油份含量较高、蛋白含量偏低,第IV类群高油,第V类群高蛋白,类群间的氨基酸、脂肪酸组分各有差异。需根据育种目标在群体间选配亲本,以提高品质育种的效率。     

Responses of plant community to the linkages in plant-soil C:N:P stoichiometry during secondary succession of abandoned farmlands,China

Succession is one of the central themes of ecology;however,the relationship between aboveground plant communities and underground soils during secondary succession remains unclear.In this study,we investigated the composition of plant community,plant-soil C:N:P stoichiometry and their relationships during secondary succession after the abandonment of farmlands for 0,10,20,30,40 and 50 a in China,2016.Results showed that the composition of plant communities was most diverse in the farmlands after secondary succession for 20 and 50 a.Soil organic carbon and total nitrogen contents slightly decreased after secondary succession for 30 a,but both were significantly higher than those of control farmland(31.21%-139.10%and 24.24%-121.21%,respectively).Moreover,C:N ratios of soil and microbe greatly contributed to the changes in plant community composition during secondary succession of abandoned farmlands,explaining 35.70%of the total variation.Particularly,soil C:N ratio was significantly and positively related with the Shannon-Wiener index.This study provides the evidence of synchronous evolution between plant community and soil during secondary succession and C:N ratio is an important linkage between them.     

油-棉连作棉田油菜秸秆覆盖对棉田杂草发生及土壤杂草种子库的动态影响

在安徽省沿江棉区开展了油菜秸秆覆盖对棉田杂草发生、棉花生长及土壤杂草种子库影响的研究。结果表明,随着油菜秸秆覆盖量的增加,对棉田杂草的抑制效果增强。与未覆盖秸秆且不除草处理相比较,7000Kg/hm²秸秆覆盖量处理棉花单株铃数和子棉产量显著提高。7000Kg/hm²秸秆覆盖量处理在覆盖后30d、60d和120d逐步减少0-20cm土层杂草种子库密度,与全程除草剂处理较一致；随着覆盖量减少,对0-20cm土层杂草种子库密度降低幅度减小。全程除草剂处理降低0-5cm土层杂草种子库多样性,而油菜秸秆覆盖则可能增加0-5cm土层的杂草种子库多样性。3500Kg/hm²覆盖量+秸秆覆盖30d后喷施除草剂处理的抑草效果和增产效果与全程除草剂处理一致。因此,在安徽省沿江棉区油-棉连作棉田推荐使用3500Kg/hm²油菜秸秆覆盖量+秸秆覆盖30d后喷施除草剂。     

天山云杉林冠层结构对草本物种多样性的影响

为研究天山云杉林冠层特征与林下草本物种多样性的相互关系，以新疆天格尔森林公园天山云杉林的4个龄级的林分（幼林龄、中林龄、近熟林、成熟林）为研究对象，以冠层分析仪获得的冠层结构特征和林下光环境指数等野外实际调查数据为依据，通过计算 α 多样性指数分析4个龄级的草本物种多样性，利用多元统计方法研究冠层结构对草本多样性的影响。结果表明，各个指标在不同龄级间均有一定的差异，且随着林分的生长和更新，天山云杉林呈现林冠开度逐渐减小、叶面积指数增大、林下光辐射均减弱、物种多样性指数均减小的趋势；典型模型表明林冠开度对冠层结构起到主要作用（呈极显著正相关P<0.01），叶面积指数次之（呈极显著负相关P<0.01）；在林下辐射中，林下总辐射对林内光环境起主要作用；相比冠层结构，林下光照对草本层物种多样性的作用更大，其中林冠开度和丰富度指数之间呈显著正相关，林下总辐射、林下直射辐射和多样性指数、均匀度指数之间均呈显著正相关。     

国际30年来土壤食物网的研究历程与热点分析

利用文献计量学方法,研究1989—2018年来土壤食物网研究领域的热点内容,概括土壤食物网的研究脉络及国际土壤食物网未来的研究方向。结果显示:土壤生物多样性、食物网的碳氮循环功能及管理方式对土壤食物网结构的干扰是现在研究热点,而土壤食物网功能多样性、系统稳定性、及土壤食物网对全球变化的响应则是新兴的研究方向。